Arabidopsis thaliana      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 23 genes.  Reviewed (6 or Unreviewed (17

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Art-1083
AT4G06599
Q8W3M6
At4g06599
2
iEKPD-Art-1103
AT4G21670
Q5YDB6
CPL1
3
iEKPD-Art-1086
AT5G01270
Q5YDB5
CPL2
4
iEKPD-Art-1545
AT2G33540
Q8LL04
CPL3
5
iEKPD-Art-1544
AT5G58003
Q00IB6
CPL4
6
iEKPD-Art-1073
AT1G55900
Q8VYE2
TIM50
7
iEKPD-Art-1071
AT1G20320
Q9LN24
At1g20320
8
iEKPD-Art-1065
AT1G43600
Q3E7I8
At1g43600
9
iEKPD-Art-1068
AT1G43610
Q3ECX9
At1g43610
10
iEKPD-Art-1069
AT2G02290
Q9ZVR2
At2g02290
11
iEKPD-Art-1067
AT2G04930
Q9SI33
At2g04930
12
iEKPD-Art-1084
AT2G36540
Q9SJQ4
At2g36540
13
iEKPD-Art-1064
AT3G17550
Q9LUP3
At3g17550
14
iEKPD-Art-1075
AT3G19595
Q9LJN7
At3g19595
15
iEKPD-Art-1079
AT5G23470
Q9FHL1
At5g23470
16
iEKPD-Art-1070
AT1G29770
Q9FXF4
CELLULOSE SYNTHASE LIKE D1
17
iEKPD-Art-1059
AT1G29780
A2RVS1
CELLULOSE SYNTHASE LIKE D5
18
iEKPD-Art-1077
AT3G55960
Q9LY49
F27K19_140
19
iEKPD-Art-1061
AT5G54210
Q9FL74
MDK4.3
20
iEKPD-Art-1063
AT5G45700
Q9FK73
MRA19.9
21
iEKPD-Art-1056
AT5G11860
Q9LYI7
SCP1-like small phosphatase 5
22
iEKPD-Art-1066
AT5G46410
F4KHG9
SSP4
23
iEKPD-Art-1072
AT4G18140
F4JQR6
SSP4b