Brassica oleracea      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 34 genes.  Reviewed (0 or Unreviewed (34

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Bro-1904
Bo1g052910
A0A0D3A7E2
2
iEKPD-Bro-1915
Bo1g128670
A0A0D3ADH3
3
iEKPD-Bro-1937
Bo2g147630
A0A0D3AWH2
4
iEKPD-Bro-1938
Bo2g149250
A0A0D3AWN5
5
iEKPD-Bro-1945
Bo3g001510
A0A0D3AZB6
6
iEKPD-Bro-1971
Bo3g073330
A0A0D3BC75
7
iEKPD-Bro-1972
Bo3g073350
A0A0D3BC77
8
iEKPD-Bro-1979
Bo3g146410
A0A0D3BIY3
9
iEKPD-Bro-2043
Bo5g113840
A0A0D3CID5
10
iEKPD-Bro-2062
Bo6g035860
A0A0D3CR41
11
iEKPD-Bro-2075
Bo7g045010
A0A0D3D5X3
12
iEKPD-Bro-2138
Bo9g169830
A0A0D3EG36
13
iEKPD-Bro-2142
Bo9g174400
A0A0D3EGU5
14
iEKPD-Bro-2064
Bo6g051540
A0A0D3CSH0
106296284
15
iEKPD-Bro-2065
Bo6g069880
A0A0D3CU17
106296718
16
iEKPD-Bro-1911
Bo1g113510
A0A0D3AC96
106301825
17
iEKPD-Bro-2080
Bo7g072770
A0A0D3D9B5
106304219
18
iEKPD-Bro-2076
Bo7g045020
A0A0D3D5X4
106305594
19
iEKPD-Bro-2081
Bo7g075340
A0A0D3D9H4
106305899
20
iEKPD-Bro-2089
Bo7g107490
A0A0D3DFA1
106306002
21
iEKPD-Bro-2112
Bo8g090330
A0A0D3DTI0
106307852
22
iEKPD-Bro-1900
Bo1g024360
A0A0D3A4W7
106311377
23
iEKPD-Bro-2669
Bo9g133630
A0A0D3EC93
106315551
24
iEKPD-Bro-2125
Bo9g008950
A0A0D3E0P0
106315601
25
iEKPD-Bro-2667
Bo3g019010
A0A0D3B2X1
106331434
26
iEKPD-Bro-1960
Bo3g046950
A0A0D3B8C4
106332277
27
iEKPD-Bro-1978
Bo3g146400
A0A0D3BIY2
106334056
28
iEKPD-Bro-1990
Bo3g185680
A0A0D3BND3
106335757
29
iEKPD-Bro-1983
Bo3g162440
A0A0D3BKP6
106336486
30
iEKPD-Bro-2021
Bo4g188840
A0A0D3C5B8
106337225
31
iEKPD-Bro-1996
Bo4g033420
A0A0D3BRG8
106339780
32
iEKPD-Bro-2668
Bo4g043610
A0A0D3BSE4
106342266
33
iEKPD-Bro-2038
Bo5g060990
A0A0D3CEL1
106344706
34
iEKPD-Bro-2045
Bo5g115380
A0A0D3CIJ0
106345124