Glycine max      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 26 genes.  Reviewed (0 or Unreviewed (26

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Glm-2414
GLYMA_13G241400
2
iEKPD-Glm-2415
GLYMA_14G014300
3
iEKPD-Glm-2450
GLYMA_14G059000
4
iEKPD-Glm-2470
GLYMA_07G148100
K7L1T3
100777842
5
iEKPD-Glm-3360
GLYMA_02G203000
I1JGN5
100785033
6
iEKPD-Glm-2453
GLYMA_15G087100
I1MEW5
100786396
7
iEKPD-Glm-2452
GLYMA_09G088300
K7LCN0
100786602
8
iEKPD-Glm-2474
GLYMA_13G181700
I1M0C8
100789209
9
iEKPD-Glm-3362
GLYMA_18G282300
K7MV85
100790196
10
iEKPD-Glm-3361
GLYMA_08G257900
I1KWR8
100798750
11
iEKPD-Glm-2461
GLYMA_15G196400
K7MCJ2
100799803
12
iEKPD-Glm-3359
GLYMA_17G074700
K7MKD8
100800381
13
iEKPD-Glm-2447
GLYMA_18G006900
K7MP89
100804307
14
iEKPD-Glm-2459
GLYMA_19G190500
I1NAI1
100809489
15
iEKPD-Glm-2451
GLYMA_04G128700
K7KJU9
100810756
16
iEKPD-Glm-2475
GLYMA_18G199400
K7MTG8
100811605
17
iEKPD-Glm-2458
GLYMA_05G168000
C6T717
100812010
18
iEKPD-Glm-2460
GLYMA_06G314700
K7KYH6
100813300
19
iEKPD-Glm-2419
GLYMA_15G072000
I1MEF7
100816525
20
iEKPD-Glm-2469
GLYMA_18G269100
K7MUZ3
100817297
21
iEKPD-Glm-2403
GLYMA_07G194800
I1KLI0
100819722
22
iEKPD-Glm-2455
GLYMA_02G257400
I1JI92
GLYMA_02G257400
23
iEKPD-Glm-2462
GLYMA_02G299400
I1JJI9
GLYMA_02G299400
24
iEKPD-Glm-2464
GLYMA_08G126400
I1KSQ5
GLYMA_08G126400
25
iEKPD-Glm-2446
GLYMA_11G250300
I1LN83
GLYMA_11G250300
26
iEKPD-Glm-2457
GLYMA_13G225100
K7M175
GLYMA_13G225100