Gossypium raimondii      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 27 genes.  Reviewed (0 or Unreviewed (27

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Gor-1673
B456_001G076500
A0A0D2PVQ2
B456_001G076500
2
iEKPD-Gor-1686
B456_002G099000
A0A0D2Q3C3
B456_002G099000
3
iEKPD-Gor-1691
B456_002G183900
A0A0D2QF59
B456_002G183900
4
iEKPD-Gor-1696
B456_002G264300
A0A0D2RD48
B456_002G264300
5
iEKPD-Gor-1709
B456_004G033300
A0A0D2QR48
B456_004G033300
6
iEKPD-Gor-2359
B456_005G016300
A0A0D2N6Q3
B456_005G016300
7
iEKPD-Gor-1740
B456_005G241400
A0A0D2RSI9
B456_005G241400
8
iEKPD-Gor-1743
B456_006G009600
A0A0D2RNI5
B456_006G009600
9
iEKPD-Gor-1765
B456_007G070300
A0A0D2P4E2
B456_007G070300
10
iEKPD-Gor-1826
B456_009G448800
A0A0D2SIT4
B456_009G448800
11
iEKPD-Gor-1827
B456_009G449000
A0A0D2U4Y4
B456_009G449000
12
iEKPD-Gor-1828
B456_009G449200
A0A0D2U246
B456_009G449200
13
iEKPD-Gor-1839
B456_010G161800
A0A0D2STY3
B456_010G161800
14
iEKPD-Gor-1840
B456_010G161900
A0A0D2UDF8
B456_010G161900
15
iEKPD-Gor-1841
B456_010G162000
A0A0D2VB44
B456_010G162000
16
iEKPD-Gor-1842
B456_010G162100
A0A0D2UDA6
B456_010G162100
17
iEKPD-Gor-1843
B456_010G162300
A0A0D2R8V0
B456_010G162300
18
iEKPD-Gor-1844
B456_010G164300
A0A0D2UFV0
B456_010G164300
19
iEKPD-Gor-1849
B456_010G255100
A0A0D2RDP0
B456_010G255100
20
iEKPD-Gor-1850
B456_011G025900
A0A0D2VHD4
B456_011G025900
21
iEKPD-Gor-1851
B456_011G035900
A0A0D2T1U6
B456_011G035900
22
iEKPD-Gor-1852
B456_011G036000
A0A0D2ULT2
B456_011G036000
23
iEKPD-Gor-1853
B456_011G036100
A0A0D2VHQ5
B456_011G036100
24
iEKPD-Gor-1854
B456_011G041000
A0A0D2RGM7
B456_011G041000
25
iEKPD-Gor-1867
B456_011G288400
A0A0D2RU90
B456_011G288400
26
iEKPD-Gor-2362
B456_012G125200
A0A0D2V4M9
B456_012G125200
27
iEKPD-Gor-1886
B456_013G018000
A0A0D2V995
B456_013G018000