Setaria italica      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 17 genes.  Reviewed (0 or Unreviewed (17

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Sei-1390
Si010082m.g
K3Y791
LOC101753734
2
iEKPD-Sei-1384
Si022349m.g
K3Z730
LOC101757531
3
iEKPD-Sei-1383
Si022326m.g
K3Z706
LOC101757535
4
iEKPD-Sei-1857
Si019173m.g
K3YY23
LOC101757759
5
iEKPD-Sei-1389
Si019418m.g
K3YYR2
LOC101758169
6
iEKPD-Sei-1386
Si030027m.g
K3ZTU7
LOC101758718
7
iEKPD-Sei-1380
Si001362m.g
K3XHJ1
LOC101762870
8
iEKPD-Sei-1376
Si022793m.g
K3Z8C3
LOC101764027
9
iEKPD-Sei-1400
Si000422m.g
K3XEV5
LOC101764359
10
iEKPD-Sei-1375
Si002329m.g
K3XKA6
LOC101765036
11
iEKPD-Sei-1379
Si002037m.g
K3XJG4
LOC101776114
12
iEKPD-Sei-1377
Si001967m.g
K3XJ94
LOC101776229
13
iEKPD-Sei-1373
Si001474m.g
K3XHU7
LOC101777600
14
iEKPD-Sei-1361
Si016243m.g
K3YPQ1
LOC101778165
15
iEKPD-Sei-1395
Si009341m.g
K3Y553
LOC101785183
16
iEKPD-Sei-1858
Si021686m.g
K3Z568
LOC101786822
17
iEKPD-Sei-1859
Si025879m.g
A0A0Q3UZE7
SETIT_0258791mg