Triticum aestivum      Asp-Based PSP/FCP


※ FCP family introduction

    FCP/SCP phosphatase belongs to a family of phosphatase which uses an Asp nucleophile for catalysis. FCP/SCP is characterized by its phosphatase activity towards the CTD of the largest subunit of RNA polymerase II (1). At least seven members have been identified in human genome and FCP/SCP phosphatases share a conserved catalytic signature, which is known as DXDXT/V (2). Family member FCP1 is conserved among all eukaryotes and plays an important role in cell survival in budding and fission yeasts. SCP1 preferentially dephosphorylates Ser5 in CTD domain of RNA polymerase II and plays a role in the regulation of gene expression by controlling the transition from initiation/capping to processive transcript elongation (3). In addition, SCP1 also acts as a key regulator that functions in silencing neuronal gene expression (4).

Reference
1. Shi, Y. (2009) Serine/threonine phosphatases: mechanism through structure. Cell, 139, 468-484. PMID: 19879837
2. Moorhead, G.B., Trinkle-Mulcahy, L. and Ulke-Lemee, A. (2007) Emerging roles of nuclear protein phosphatases. Nat Rev Mol Cell Biol, 8, 234-244. PMID: 17318227
3. Yeo, M., Lin, P.S., Dahmus, M.E. and Gill, G.N. (2003) A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5. J Biol Chem, 278, 26078-26085. PMID: 12721286
4. Yeo, M., Lee, S.K., Lee, B., Ruiz, E.C., Pfaff, S.L. and Gill, G.N. (2005) Small CTD phosphatases function in silencing neuronal gene expression. Science, 307, 596-600. PMID: 15681389


There are 51 genes.  Reviewed (0 or Unreviewed (51

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Tra-6253
TRIAE_CS42_1AL_TGACv1_000219_AA0006480
A0A1D5RQ55
2
iEKPD-Tra-4818
TRIAE_CS42_1AL_TGACv1_001595_AA0032650
A0A1D5RVG7
3
iEKPD-Tra-4820
TRIAE_CS42_1AL_TGACv1_001862_AA0036010
A0A1D5RWA7
4
iEKPD-Tra-4831
TRIAE_CS42_1BL_TGACv1_030386_AA0088990
A0A1D5S6F4
5
iEKPD-Tra-4834
TRIAE_CS42_1BL_TGACv1_031294_AA0110970
A0A1D6REH9
6
iEKPD-Tra-6254
TRIAE_CS42_1BL_TGACv1_031313_AA0111430
A0A1D6REM7
7
iEKPD-Tra-6255
TRIAE_CS42_1DL_TGACv1_061628_AA0200340
A0A1D5SSV3
8
iEKPD-Tra-6256
TRIAE_CS42_1DL_TGACv1_061628_AA0200350
A0A1D5SSV5
9
iEKPD-Tra-4867
TRIAE_CS42_1DL_TGACv1_063307_AA0226140
A0A1D5SYS0
10
iEKPD-Tra-4868
TRIAE_CS42_1DL_TGACv1_063535_AA0228390
A0A1D5SZA7
11
iEKPD-Tra-6257
TRIAE_CS42_2AL_TGACv1_094183_AA0294020
A0A1D5TAZ2
12
iEKPD-Tra-4881
TRIAE_CS42_2AL_TGACv1_095021_AA0305960
A0A1D6RJD3
13
iEKPD-Tra-6258
TRIAE_CS42_2BL_TGACv1_129696_AA0392890
A0A1D5TW10
14
iEKPD-Tra-4900
TRIAE_CS42_2BL_TGACv1_130974_AA0420730
A0A1D5U1P9
15
iEKPD-Tra-4913
TRIAE_CS42_2DL_TGACv1_158902_AA0528380
A0A1D5ULE3
16
iEKPD-Tra-6259
TRIAE_CS42_2DL_TGACv1_159121_AA0532930
A0A1D5UMD3
17
iEKPD-Tra-4915
TRIAE_CS42_2DL_TGACv1_159953_AA0544850
A0A1D5UQ11
18
iEKPD-Tra-4926
TRIAE_CS42_3AL_TGACv1_193608_AA0614790
A0A1D5V447
19
iEKPD-Tra-4928
TRIAE_CS42_3AL_TGACv1_193631_AA0615740
A0A1D5V4D3
20
iEKPD-Tra-4930
TRIAE_CS42_3AL_TGACv1_193863_AA0621170
A0A1D5V5G7
21
iEKPD-Tra-4931
TRIAE_CS42_3AL_TGACv1_194002_AA0624360
W5CE02
22
iEKPD-Tra-4935
TRIAE_CS42_3AL_TGACv1_194733_AA0638380
A0A1D5V972
23
iEKPD-Tra-4938
TRIAE_CS42_3AL_TGACv1_195145_AA0645310
A0A1D5VAQ8
24
iEKPD-Tra-4953
TRIAE_CS42_3B_TGACv1_220592_AA0710090
A0A1D5VMY7
25
iEKPD-Tra-4978
TRIAE_CS42_3B_TGACv1_225356_AA0807440
A0A1D5W7R1
26
iEKPD-Tra-4990
TRIAE_CS42_3DL_TGACv1_249372_AA0846920
A0A1D5WEJ3
27
iEKPD-Tra-4992
TRIAE_CS42_3DL_TGACv1_249898_AA0858350
A0A1D5WGW3
28
iEKPD-Tra-4995
TRIAE_CS42_3DL_TGACv1_251077_AA0877170
A0A1D5WKN5
29
iEKPD-Tra-4998
TRIAE_CS42_3DL_TGACv1_252266_AA0888960
A0A1D5WNL2
30
iEKPD-Tra-4999
TRIAE_CS42_3DL_TGACv1_253300_AA0894100
W5DE72
31
iEKPD-Tra-5011
TRIAE_CS42_4AL_TGACv1_290835_AA0989900
W5DQG6
32
iEKPD-Tra-6260
TRIAE_CS42_4AS_TGACv1_306247_AA1005020
A0A1D5XA18
33
iEKPD-Tra-6261
TRIAE_CS42_4BL_TGACv1_320830_AA1049720
A0A1D5XIM2
34
iEKPD-Tra-6262
TRIAE_CS42_4DL_TGACv1_345628_AA1154000
W5EFW8
35
iEKPD-Tra-5064
TRIAE_CS42_5AL_TGACv1_374831_AA1209800
A0A1D5YG59
36
iEKPD-Tra-5087
TRIAE_CS42_5BL_TGACv1_405683_AA1332790
A0A1D6S351
37
iEKPD-Tra-5091
TRIAE_CS42_5BL_TGACv1_406278_AA1343610
A0A1D5Z8R8
38
iEKPD-Tra-5104
TRIAE_CS42_5DL_TGACv1_433082_AA1401230
A0A096UTB8
39
iEKPD-Tra-5119
TRIAE_CS42_5DL_TGACv1_436619_AA1462310
W5FZQ4
40
iEKPD-Tra-5127
TRIAE_CS42_6AL_TGACv1_471897_AA1515740
A0A1D6A8M8
41
iEKPD-Tra-5136
TRIAE_CS42_6AS_TGACv1_485492_AA1546320
A0A1D6AEN8
42
iEKPD-Tra-5150
TRIAE_CS42_6BL_TGACv1_501087_AA1613340
A0A1D6ARF9
43
iEKPD-Tra-5157
TRIAE_CS42_6BS_TGACv1_514416_AA1659450
A0A1D6AZ85
44
iEKPD-Tra-5165
TRIAE_CS42_6DL_TGACv1_527120_AA1698910
A0A1D6B6R2
45
iEKPD-Tra-5168
TRIAE_CS42_6DL_TGACv1_527693_AA1707580
W5GW27
46
iEKPD-Tra-5174
TRIAE_CS42_6DS_TGACv1_542716_AA1728640
A0A1D6BCU5
47
iEKPD-Tra-5239
TRIAE_CS42_U_TGACv1_641278_AA2090500
A0A1D6DAI4
48
iEKPD-Tra-5251
TRIAE_CS42_U_TGACv1_642519_AA2118860
A0A1D6DG51
49
iEKPD-Tra-4973
TRIAE_CS42_3B_TGACv1_224053_AA0791680
W5D698
TRAES_3BF003200110CFD_c1
50
iEKPD-Tra-4980
TRIAE_CS42_3B_TGACv1_227585_AA0823910
A0A077S1D3
TRAES_3BF009500110CFD_c1
51
iEKPD-Tra-4977
TRIAE_CS42_3B_TGACv1_224428_AA0796680
A0A077RXQ6
TRAES_3BF021100020CFD_c1