Oreochromis niloticus      Atypical/PIKK


※ PIKK family introduction

    Phosphatidylinositol-3 kinase-related kinases (PIKKs) belong to atypical protein kinase group, which share little similarity of kinase catalytic domain. PIKKs family contains six members which are involved in responding to various stresses, including DNA damage, blocks in DNA replication, availability of nutrients and errors in mRNA splicing. The protein kinase domain of PIKKS, located in C-terminus, is always flanked by two conserved domain, known as FAT and FATC domain, which may interact and participate in kinase regulation (1). ATM, one of family member, is involved in responding to a specific type of DNA damage, such as DNA double strand breaks, and controls the cell-cycle progression by phosphorylates multiple substrates including p53 and Chk2. In addition, ATM also locates in cytoplasmic especially in neuronal or neuron-like cells (2). Ataxia telangiectasia and Rad3-related protein (ATR) acts as a DNA damage sensor. Activated by DNA lesions including base adducts, crosslinks, DSBs, and compounds that directly promote replication stress such as hydroxyurea and aphidicolin and phosphorylates multiple substrates to control the DNA replication and mitosis (3). mTOR is a serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. mTOR is regulated by dynamic changes in cellular localization (3). Transformation/transcription domain-associated protein (TRRAP) is also structurally related to the PIKK family. TRRAP proteins (Tra1 in budding yeast) are common components of many histone acetyltransferase (HAT) complexes, and mediate a variety of cellular processes by recruiting HAT complexes to chromatin (4).

Reference
1. Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J, 28, 3067-3073. PMID: 19779456
2. Yang, D.Q., Halaby, M.J., Li, Y., Hibma, J.C. and Burn, P. (2011) Cytoplasmic ATM protein kinase: an emerging therapeutic target for diabetes, cancer and neuronal degeneration. Drug Discov Today, 16, 332-338. PMID: 21315178
3. Lovejoy, C.A. and Cortez, D. (2009) Common mechanisms of PIKK regulation. DNA Repair (Amst), 8, 1004-1008. PMID: 19464237
4. Kanoh, J. and Yanagida, M. (2007) Tel2: a common partner of PIK-related kinases and a link between DNA checkpoint and nutritional response? Genes Cells, 12, 1301-1304. PMID: 18076567


There are 21 genes.  Reviewed (0 or Unreviewed (21

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Orn-0022
ENSONIG00000000770.1
I3IWI2
2
iEKPD-Orn-0585
ENSONIG00000019810.1
I3KUZ2
3
iEKPD-Orn-g001
ENSONIG00000000290.1
I3IUS5
4
iEKPD-Orn-g005
ENSONIG00000011267.1
I3JZ86
5
iEKPD-Orn-0147
ENSONIG00000005496.1
I3JDG6
atm
6
iEKPD-Orn-0044
ENSONIG00000001510.1
I3IZ49
LOC100691684
7
iEKPD-Orn-0221
ENSONIG00000008379.1
I3JNU1
LOC100704479
8
iEKPD-Orn-0050
ENSONIG00000001605.1
I3IZH3
LOC100706781
9
iEKPD-Orn-0522
ENSONIG00000017919.1
I3KN90
LOC100707861
10
iEKPD-Orn-0259
ENSONIG00000009275.1
I3JS20
mtor
11
iEKPD-Orn-g008
ENSONIG00000014336.1
I3KA80
PI4KA
12
iEKPD-Orn-0110
ENSONIG00000003950.1
I3J7Y8
PI4KB (1 of many)
13
iEKPD-Orn-0467
ENSONIG00000015560.1
I3KEN4
pik3c2a
14
iEKPD-Orn-0226
ENSONIG00000008497.1
I3JP86
PIK3C2G
15
iEKPD-Orn-0397
ENSONIG00000012919.1
I3K560
pik3c3
16
iEKPD-Orn-0315
ENSONIG00000010693.1
I3JX49
PIK3CA
17
iEKPD-Orn-0211
ENSONIG00000007924.1
I3JM92
pik3cb
18
iEKPD-Orn-0066
ENSONIG00000002388.1
I3J294
pik3cd
19
iEKPD-Orn-0362
ENSONIG00000011855.1
I3K1C8
pik3cg
20
iEKPD-Orn-0133
ENSONIG00000004883.1
I3JBA1
prkdc
21
iEKPD-Orn-0099
ENSONIG00000003445.1
I3J647
smg1