Oryzias latipes      Atypical/PIKK


※ PIKK family introduction

    Phosphatidylinositol-3 kinase-related kinases (PIKKs) belong to atypical protein kinase group, which share little similarity of kinase catalytic domain. PIKKs family contains six members which are involved in responding to various stresses, including DNA damage, blocks in DNA replication, availability of nutrients and errors in mRNA splicing. The protein kinase domain of PIKKS, located in C-terminus, is always flanked by two conserved domain, known as FAT and FATC domain, which may interact and participate in kinase regulation (1). ATM, one of family member, is involved in responding to a specific type of DNA damage, such as DNA double strand breaks, and controls the cell-cycle progression by phosphorylates multiple substrates including p53 and Chk2. In addition, ATM also locates in cytoplasmic especially in neuronal or neuron-like cells (2). Ataxia telangiectasia and Rad3-related protein (ATR) acts as a DNA damage sensor. Activated by DNA lesions including base adducts, crosslinks, DSBs, and compounds that directly promote replication stress such as hydroxyurea and aphidicolin and phosphorylates multiple substrates to control the DNA replication and mitosis (3). mTOR is a serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. mTOR is regulated by dynamic changes in cellular localization (3). Transformation/transcription domain-associated protein (TRRAP) is also structurally related to the PIKK family. TRRAP proteins (Tra1 in budding yeast) are common components of many histone acetyltransferase (HAT) complexes, and mediate a variety of cellular processes by recruiting HAT complexes to chromatin (4).

Reference
1. Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J, 28, 3067-3073. PMID: 19779456
2. Yang, D.Q., Halaby, M.J., Li, Y., Hibma, J.C. and Burn, P. (2011) Cytoplasmic ATM protein kinase: an emerging therapeutic target for diabetes, cancer and neuronal degeneration. Drug Discov Today, 16, 332-338. PMID: 21315178
3. Lovejoy, C.A. and Cortez, D. (2009) Common mechanisms of PIKK regulation. DNA Repair (Amst), 8, 1004-1008. PMID: 19464237
4. Kanoh, J. and Yanagida, M. (2007) Tel2: a common partner of PIK-related kinases and a link between DNA checkpoint and nutritional response? Genes Cells, 12, 1301-1304. PMID: 18076567


There are 18 genes.  Reviewed (0 or Unreviewed (18

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Ore-0019
ENSORLG00000000484.1
H2L4B7
2
iEKPD-Ore-0054
ENSORLG00000001750.1
H2L8L2
3
iEKPD-Ore-0089
ENSORLG00000003282.1
H2LDR7
4
iEKPD-Ore-0338
ENSORLG00000012184.1
H2M9Q9
5
iEKPD-Ore-g004
ENSORLG00000000630.1
H2L4T2
6
iEKPD-Ore-g003
ENSORLG00000001292.1
H2L6X9
7
iEKPD-Ore-g001
ENSORLG00000010776.1
H2M4Z3
8
iEKPD-Ore-0369
ENSORLG00000012828.3
H2MBY9
atm
9
iEKPD-Ore-g013
ENSORLG00000002217.1
H2LA58
PI4KA
10
iEKPD-Ore-0565
ENSORLG00000020847.1
H2N2X9
pi4kb
11
iEKPD-Ore-0038
ENSORLG00000001264.1
H2L6U9
PI4KB (1 of many)
12
iEKPD-Ore-0210
ENSORLG00000007721.1
H2LU99
pik3c3
13
iEKPD-Ore-0325
ENSORLG00000011644.1
H2M7Z5
pik3ca
14
iEKPD-Ore-0251
ENSORLG00000008938.1
H2LYJ3
PIK3CA (1 of many)
15
iEKPD-Ore-0436
ENSORLG00000015529.1
H2ML76
pik3cb
16
iEKPD-Ore-0155
ENSORLG00000005422.1
H2LLC3
pik3cd
17
iEKPD-Ore-0273
ENSORLG00000009458.1
H2M0C9
pik3cg
18
iEKPD-Ore-0156
ENSORLG00000005452.2
H2LLF6
prkdc