Takifugu rubripes      Atypical/PIKK


※ PIKK family introduction

    Phosphatidylinositol-3 kinase-related kinases (PIKKs) belong to atypical protein kinase group, which share little similarity of kinase catalytic domain. PIKKs family contains six members which are involved in responding to various stresses, including DNA damage, blocks in DNA replication, availability of nutrients and errors in mRNA splicing. The protein kinase domain of PIKKS, located in C-terminus, is always flanked by two conserved domain, known as FAT and FATC domain, which may interact and participate in kinase regulation (1). ATM, one of family member, is involved in responding to a specific type of DNA damage, such as DNA double strand breaks, and controls the cell-cycle progression by phosphorylates multiple substrates including p53 and Chk2. In addition, ATM also locates in cytoplasmic especially in neuronal or neuron-like cells (2). Ataxia telangiectasia and Rad3-related protein (ATR) acts as a DNA damage sensor. Activated by DNA lesions including base adducts, crosslinks, DSBs, and compounds that directly promote replication stress such as hydroxyurea and aphidicolin and phosphorylates multiple substrates to control the DNA replication and mitosis (3). mTOR is a serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. mTOR is regulated by dynamic changes in cellular localization (3). Transformation/transcription domain-associated protein (TRRAP) is also structurally related to the PIKK family. TRRAP proteins (Tra1 in budding yeast) are common components of many histone acetyltransferase (HAT) complexes, and mediate a variety of cellular processes by recruiting HAT complexes to chromatin (4).

Reference
1. Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J, 28, 3067-3073. PMID: 19779456
2. Yang, D.Q., Halaby, M.J., Li, Y., Hibma, J.C. and Burn, P. (2011) Cytoplasmic ATM protein kinase: an emerging therapeutic target for diabetes, cancer and neuronal degeneration. Drug Discov Today, 16, 332-338. PMID: 21315178
3. Lovejoy, C.A. and Cortez, D. (2009) Common mechanisms of PIKK regulation. DNA Repair (Amst), 8, 1004-1008. PMID: 19464237
4. Kanoh, J. and Yanagida, M. (2007) Tel2: a common partner of PIK-related kinases and a link between DNA checkpoint and nutritional response? Genes Cells, 12, 1301-1304. PMID: 18076567


There are 21 genes.  Reviewed (0 or Unreviewed (21

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Tar-0098
ENSTRUG00000003492.1
H2S722
2
iEKPD-Tar-0183
ENSTRUG00000005750.1
H2SNI5
3
iEKPD-Tar-0295
ENSTRUG00000009037.1
H2TDI2
4
iEKPD-Tar-0568
ENSTRUG00000017418.1
H2V604
5
iEKPD-Tar-g012
ENSTRUG00000001136.1
H2RR78
6
iEKPD-Tar-g002
ENSTRUG00000012559.1
H2U4E4
7
iEKPD-Tar-g009
ENSTRUG00000018559.1
H2VE82
8
iEKPD-Tar-0094
ENSTRUG00000003394.1
H2S6D1
atm
9
iEKPD-Tar-0454
ENSTRUG00000013854.1
H2UEP9
atr
10
iEKPD-Tar-0237
ENSTRUG00000007297.1
H2SZZ4
LOC101078308
11
iEKPD-Tar-0294
ENSTRUG00000009031.1
H2TDG4
mtor
12
iEKPD-Tar-0006
ENSTRUG00000000180.1
H2RJR6
PI4KB (1 of many)
13
iEKPD-Tar-0480
ENSTRUG00000014988.1
H2UMX5
pik3c2a
14
iEKPD-Tar-0554
ENSTRUG00000017027.1
H2V324
PIK3C2G
15
iEKPD-Tar-0590
ENSTRUG00000018120.1
H2VAZ1
pik3c3
16
iEKPD-Tar-0115
ENSTRUG00000004021.1
H2SAV3
PIK3CA (1 of many)
17
iEKPD-Tar-0211
ENSTRUG00000006539.1
H2SUG3
PIK3CA (1 of many)
18
iEKPD-Tar-0233
ENSTRUG00000007179.1
H2SZ17
pik3cb
19
iEKPD-Tar-0335
ENSTRUG00000010193.1
H2TLW7
pik3cd
20
iEKPD-Tar-0385
ENSTRUG00000011555.1
H2TWY0
pik3cg
21
iEKPD-Tar-0546
ENSTRUG00000016842.1
H2V1R9
trrap