Tetraodon nigroviridis      Atypical/PIKK


※ PIKK family introduction

    Phosphatidylinositol-3 kinase-related kinases (PIKKs) belong to atypical protein kinase group, which share little similarity of kinase catalytic domain. PIKKs family contains six members which are involved in responding to various stresses, including DNA damage, blocks in DNA replication, availability of nutrients and errors in mRNA splicing. The protein kinase domain of PIKKS, located in C-terminus, is always flanked by two conserved domain, known as FAT and FATC domain, which may interact and participate in kinase regulation (1). ATM, one of family member, is involved in responding to a specific type of DNA damage, such as DNA double strand breaks, and controls the cell-cycle progression by phosphorylates multiple substrates including p53 and Chk2. In addition, ATM also locates in cytoplasmic especially in neuronal or neuron-like cells (2). Ataxia telangiectasia and Rad3-related protein (ATR) acts as a DNA damage sensor. Activated by DNA lesions including base adducts, crosslinks, DSBs, and compounds that directly promote replication stress such as hydroxyurea and aphidicolin and phosphorylates multiple substrates to control the DNA replication and mitosis (3). mTOR is a serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. mTOR is regulated by dynamic changes in cellular localization (3). Transformation/transcription domain-associated protein (TRRAP) is also structurally related to the PIKK family. TRRAP proteins (Tra1 in budding yeast) are common components of many histone acetyltransferase (HAT) complexes, and mediate a variety of cellular processes by recruiting HAT complexes to chromatin (4).

Reference
1. Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J, 28, 3067-3073. PMID: 19779456
2. Yang, D.Q., Halaby, M.J., Li, Y., Hibma, J.C. and Burn, P. (2011) Cytoplasmic ATM protein kinase: an emerging therapeutic target for diabetes, cancer and neuronal degeneration. Drug Discov Today, 16, 332-338. PMID: 21315178
3. Lovejoy, C.A. and Cortez, D. (2009) Common mechanisms of PIKK regulation. DNA Repair (Amst), 8, 1004-1008. PMID: 19464237
4. Kanoh, J. and Yanagida, M. (2007) Tel2: a common partner of PIK-related kinases and a link between DNA checkpoint and nutritional response? Genes Cells, 12, 1301-1304. PMID: 18076567


There are 21 genes.  Reviewed (0 or Unreviewed (21

No.StatusiEKPD IDEnsemble Gene IDUniProt AccessionGene Name
1
iEKPD-Ten-0012
ENSTNIG00000000762.1
H3C5K7
2
iEKPD-Ten-0066
ENSTNIG00000002939.1
H3CB85
3
iEKPD-Ten-0072
ENSTNIG00000003100.1
H3CBQ0
4
iEKPD-Ten-0087
ENSTNIG00000003530.1
H3CCZ5
5
iEKPD-Ten-0100
ENSTNIG00000003819.1
H3CDU6
6
iEKPD-Ten-0177
ENSTNIG00000006780.1
H3CMT6
7
iEKPD-Ten-0185
ENSTNIG00000006889.1
H3CN55
8
iEKPD-Ten-0199
ENSTNIG00000007257.1
H3CP77
9
iEKPD-Ten-0325
ENSTNIG00000010886.1
H3CZY0
10
iEKPD-Ten-0383
ENSTNIG00000012894.1
H3D5T0
11
iEKPD-Ten-0429
ENSTNIG00000014322.1
H3D9Z7
12
iEKPD-Ten-0468
ENSTNIG00000015164.1
H3DCH7
13
iEKPD-Ten-0501
ENSTNIG00000016035.1
H3DF30
14
iEKPD-Ten-0599
ENSTNIG00000019053.1
H3DNZ6
15
iEKPD-Ten-0618
ENSTNIG00000019433.1
H3DQ41
16
iEKPD-Ten-g011
ENSTNIG00000002862.1
H3CB06
17
iEKPD-Ten-g016
ENSTNIG00000006021.1
H3CKI5
18
iEKPD-Ten-g004
ENSTNIG00000013531.1
H3D7N6
19
iEKPD-Ten-g017
ENSTNIG00000015389.1
H3DD62
20
iEKPD-Ten-g005
ENSTNIG00000005389.1
Q4SZT6
PI4KB (1 of many)
21
iEKPD-Ten-0231
ENSTNIG00000007817.1
H3CQV3
PIK3CA