Protein Kinase Classification:      Atypical/PIKK

※ PIKK family introduction

    Phosphatidylinositol-3 kinase-related kinases (PIKKs) belong to atypical protein kinase group, which share little similarity of kinase catalytic domain. PIKKs family contains six members which are involved in responding to various stresses, including DNA damage, blocks in DNA replication, availability of nutrients and errors in mRNA splicing. The protein kinase domain of PIKKS, located in C-terminus, is always flanked by two conserved domain, known as FAT and FATC domain, which may interact and participate in kinase regulation (1). ATM, one of family member, is involved in responding to a specific type of DNA damage, such as DNA double strand breaks, and controls the cell-cycle progression by phosphorylates multiple substrates including p53 and Chk2. In addition, ATM also locates in cytoplasmic especially in neuronal or neuron-like cells (2). Ataxia telangiectasia and Rad3-related protein (ATR) acts as a DNA damage sensor. Activated by DNA lesions including base adducts, crosslinks, DSBs, and compounds that directly promote replication stress such as hydroxyurea and aphidicolin and phosphorylates multiple substrates to control the DNA replication and mitosis (3). mTOR is a serine/threonine protein kinase which is a central regulator of cellular metabolism, growth and survival in response to hormones, growth factors, nutrients, energy and stress signals. mTOR is regulated by dynamic changes in cellular localization (3). Transformation/transcription domain-associated protein (TRRAP) is also structurally related to the PIKK family. TRRAP proteins (Tra1 in budding yeast) are common components of many histone acetyltransferase (HAT) complexes, and mediate a variety of cellular processes by recruiting HAT complexes to chromatin (4).

Reference
1. Lempiainen, H. and Halazonetis, T.D. (2009) Emerging common themes in regulation of PIKKs and PI3Ks. EMBO J, 28, 3067-3073. PMID: 19779456
2. Yang, D.Q., Halaby, M.J., Li, Y., Hibma, J.C. and Burn, P. (2011) Cytoplasmic ATM protein kinase: an emerging therapeutic target for diabetes, cancer and neuronal degeneration. Drug Discov Today, 16, 332-338. PMID: 21315178
3. Lovejoy, C.A. and Cortez, D. (2009) Common mechanisms of PIKK regulation. DNA Repair (Amst), 8, 1004-1008. PMID: 19464237
4. Kanoh, J. and Yanagida, M. (2007) Tel2: a common partner of PIK-related kinases and a link between DNA checkpoint and nutritional response? Genes Cells, 12, 1301-1304. PMID: 18076567


Atypical PIKK in eukaryotes:

Aegilops tauschii (8)Ailuropoda melanoleuca (16)Amborella trichopoda (8)
Anas platyrhynchos (17)Anolis carolinensis (16)Arabidopsis lyrata (13)
Arabidopsis thaliana (10)Ashbya gossypii (7)Aspergillus clavatus (6)
Aspergillus flavus (6)Aspergillus fumigatus (6)Aspergillus nidulans (5)
Aspergillus niger (5)Aspergillus oryzae (6)Aspergillus terreus (5)
Astyanax mexicanus (18)Beauveria bassiana (7)Blumeria graminis (7)
Bos taurus (13)Brachypodium distachyon (9)Brassica oleracea (14)
Brassica rapa (15)Caenorhabditis elegans (10)Callithrix jacchus (16)
Canis familiaris (16)Carlito syrichta (16)Cavia porcellus (16)
Cercocebus atys (16)Chlamydomonas reinhardtii (9)Chlorocebus sabaeus (16)
Choloepus hoffmanni (11)Ciona intestinalis (12)Ciona savignyi (11)
Colletotrichum higginsianum (7)Colletotrichum orbiculare (7)Cryptococcus neoformans (8)
Cucumis sativus (9)Cyanidioschyzon merolae (5)Danio rerio (18)
Dasypus novemcinctus (14)Dioscorea rotundata (8)Dipodomys ordii (15)
Dothistroma septosporum (7)Drosophila melanogaster (10)Echinops telfairi (15)
Equus caballus (15)Erinaceus europaeus (13)Felis catus (16)
Ficedula albicollis (14)Fukomys damarensis (16)Fusarium oxysporum (6)
Fusarium pseudograminearum (7)Gadus morhua (18)Gaeumannomyces graminis (7)
Gallus gallus (16)Gasterosteus aculeatus (19)Glycine max (15)
Gorilla gorilla (15)Gossypium raimondii (11)Helianthus annuus (12)
Homo sapiens (6)Hordeum vulgare (8)Ictidomys tridecemlineatus (19)
Komagataella pastoris (7)Latimeria chalumnae (15)Leersia perrieri (9)
Lepisosteus oculatus (17)Leptosphaeria maculans (8)Loxodonta africana (16)
Lupinus angustifolius (5)Macaca fascicularis (16)Macaca mulatta (16)
Magnaporthe oryzae (7)Magnaporthe poae (6)Manihot esculenta (9)
Medicago truncatula (9)Melampsora laricipopulina (11)Meleagris gallopavo (16)
Mesocricetus auratus (15)Microbotryum violaceum (7)Microcebus murinus (13)
Monodelphis domestica (15)Musa acuminata (8)Mustela putorius furo (16)
Mus musculus (6)Myotis lucifugus (18)Neosartorya fischeri (6)
Neurospora crassa (7)Nicotiana attenuata (7)Nomascus leucogenys (15)
Ochotona princeps (16)Octodon degus (16)Oreochromis niloticus (21)
Ornithorhynchus anatinus (16)Oryctolagus cuniculus (16)Oryza barthii (9)
Oryza brachyantha (8)Oryza glaberrima (10)Oryza glumaepatula (9)
Oryza indica (7)Oryza longistaminata (8)Oryza meridionalis (7)
Oryza nivara (9)Oryza punctata (10)Oryza rufipogon (9)
Oryza sativa (7)Oryzias latipes (18)Ostreococcus lucimarinus (7)
Otolemur garnettii (16)Ovis aries (15)Pan paniscus (16)
Pan troglodytes (15)Papio anubis (16)Pelodiscus sinensis (16)
Petromyzon marinus (11)Phaeosphaeria nodorum (7)Phaseolus vulgaris (9)
Physcomitrella patens (11)Poecilia formosa (21)Pongo abelii (13)
Populus trichocarpa (13)Procavia capensis (14)Prunus persica (8)
Pteropus vampyrus (15)Puccinia graminis (7)Puccinia triticina (7)
Pyrenophora teres (7)Pyrenophora triticirepentis (7)Rattus norvegicus (16)
Saccharomyces cerevisiae (8)Sarcophilus harrisii (11)Schizosaccharomyces cryophilus (9)
Schizosaccharomyces japonicus (8)Schizosaccharomyces octosporus (9)Schizosaccharomyces pombe (9)
Sclerotinia sclerotiorum (2)Selaginella moellendorffii (22)Setaria italica (9)
Solanum lycopersicum (10)Solanum tuberosum (2)Sorex araneus (16)
Sorghum bicolor (7)Sporisorium reilianum (7)Sus scrofa (16)
Taeniopygia guttata (20)Takifugu rubripes (21)Tetraodon nigroviridis (21)
Theobroma cacao (8)Trichoderma reesei (7)Trichoderma virens (7)
Triticum aestivum (15)Triticum urartu (9)Tuber melanosporum (7)
Tupaia belangeri (15)Tursiops truncatus (15)Ustilago maydis (7)
Verticillium dahliae (7)Vicugna pacos (11)Vitis vinifera (8)
Xenopus tropicalis (12)Xiphophorus maculatus (21)Yarrowia lipolytica (7)
Zea mays (8)Zymoseptoria tritici (7)